YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ADA1A_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLSENASE GSNCTHPPAP VNISKAILLG VILGGLIIFG VLGNILVILS VACHRHLHSV  60
   61 THYYIVNLAV ADLLLTSTVL PFSAIFEILG YWAFGRVFCN IWAAVDVLCC TASIMGLCII 120
  121 SIDRYIGVSY PLRYPTIVTQ RRGVRALLCV WVLSLVISIG PLFGWRQPAP EDETICQINE 180
  181 EPGYVLFSAL GSFYVPLAII LVMYCRVYVV AKRESRGLKS GLKTDKSDSE QVTLRIHRKN 240
  241 VPAEGGGVSS AKNKTHFSVR LLKFSREKKA AKTLGIVVGC FVLCWLPFFL VMPIGSFFPD 300
  301 FKPSETVFKI VFWLGYLNSC INPIIYPCSS QEFKKAFQNV LRIQCLRRRQ SSKHALGYTL 360
  361 HPPSQALEGQ HRDMVRIPVG SGETFYKISK TDGVCEWKFF SSMPQGSARI TVPKDQSACT 420
  421 TARVRSKSFL QVCCCVGSSA PRPEENHQVP TIKIHTISLG ENGEEV

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.97
Transmembrane Helix	26	51	0.88
Cytoplasmic	52	62	0.84
Transmembrane Helix	63	85	0.86
Non-Cytoplasmic	86	101	0.76
Transmembrane Helix	102	122	0.95
Cytoplasmic	123	142	0.90
Transmembrane Helix	143	165	0.90
Non-Cytoplasmic	166	185	0.95
Transmembrane Helix	186	210	0.85
Cytoplasmic	211	272	0.98
Transmembrane Helix	273	294	0.91
Non-Cytoplasmic	295	466	0.52