YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CNR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSILDGLAD TTFRTITTDL LYVGSNDIQY EDIKGDMASK LGYFPQKFPL TSFRGSPFQE  60
   61 KMTAGDNSPL VPAGDTTNIT EFYNKSLSSF KENEENIQCG ENFMDMECFM ILNPSQQLAI 120
  121 AVLSLTLGTF TVLENLLVLC VILHSRSLRC RPSYHFIGSL AVADLLGSVI FVYSFVDFHV 180
  181 FHRKDSPNVF LFKLGGVTAS FTASVGSLFL TAIDRYISIH RPLAYKRIVT RPKAVVAFCL 240
  241 MWTIAIVIAV LPLLGWNCKK LQSVCSDIFP LIDETYLMFW IGVTSVLLLF IVYAYMYILW 300
  301 KAHSHAVRMI QRGTQKSIII HTSEDGKVQV TRPDQARMDI RLAKTLVLIL VVLIICWGPL 360
  361 LAIMVYDVFG KMNKLIKTVF AFCSMLCLLN STVNPIIYAL RSKDLRHAFR SMFPSCEGTA 420
  421 QPLDNSMGDS DCLHKHANNT ASMHRAAESC IKSTVKIAKV TMSVSTDTSA EAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	118	0.92
Transmembrane Helix	119	143	0.85
Cytoplasmic	144	153	0.90
Transmembrane Helix	154	176	0.90
Non-Cytoplasmic	177	190	0.91
Transmembrane Helix	191	213	0.90
Cytoplasmic	214	233	0.90
Transmembrane Helix	234	256	0.92
Non-Cytoplasmic	257	276	0.96
Transmembrane Helix	277	299	0.95
Cytoplasmic	300	344	0.96
Transmembrane Helix	345	366	0.92
Non-Cytoplasmic	367	377	0.82
Transmembrane Helix	378	400	0.92
Cytoplasmic	401	473	0.99