YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	A3LT2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALEGLRAKK RLLWRLFLSA FGLLGLYHYW FKIFRLFEVF IPMGICPMAI MPLLKDNFTG  60
   61 VLRHWARPEV LTCTSWGAPI IWDETFDPHV AEREARRQNL TIGLTVFAVG RYLEKYLEHF 120
  121 LVSAEQYFMV GQNVVYYVFT DRPEAVPHVA LGQGRLLRVK PVRREKRWQD VSMARMLTLH 180
  181 EALGGQLGRE ADYVFCLDVD QYFSGNFGPE VLADLVAQLH AWHFRWPRWM LPYERDKRSA 240
  241 AALSLSEGDF YYHAAVFGGS VAALLKLTAH CATGQQLDRE HGIEARWHDE SHLNKFFWLS 300
  301 KPTKLLSPEF CWAEEIGWRP EIHHPRLIWA PKEYALVRT

Type	Start	End	Confidence
Cytoplasmic	1	11	0.98
Transmembrane Helix	12	31	0.96
Non-Cytoplasmic	32	339	0.51