YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FACR1_RAT
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.10
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSIPEYYEG KNILLTGATG FLGKVLLEKL LRSCPKVNSV YVLVRQKAGQ TPQERVEEIL  60
   61 SGKLFDRLRD ENPDFRQKII AINSELTQPK LALSEEDKEI IIDSTNVIFH CAATVRFNEN 120
  121 LRDAVQLNVI ATRQLILLAQ QMKNLEVFMH VSTAYAYCNR KHIDEVVYPP PVDPKKLIDS 180
  181 LEWMDDGLVN DITPKLIGDR PNTYIYTKAL AEYVVQQEGA KLNVAIVRPS IVGASWKEPF 240
  241 PGWIDNFNGP SGLFIAAGKG ILRTMRASNN ALADLVPVDV VVNTSLAAAW YSGVNRPRNI 300
  301 MVYNCTTGST NPFHWGEVGD YLNHSFKTNP LNQVFRHPYV KFYSNNLMLH YWKGVKHTVP 360
  361 ALLLDLALRL TGQKPWMMKT ITRLHKAMVF LEYFTSNSWV WNTDNVNMLM NQLNPEDKKT 420
  421 FNIDVRQLHW AEYIENYCMG TKKYVLNEEM SGLPAARKHL NKLRNIRYGF NTILVILIWR 480
  481 IFIARSQMAR NIWYFVVSLC YKFLSYFRAS STMRY

Type	Start	End	Confidence
Non-Cytoplasmic	1	274	0.54
Transmembrane Helix	275	289	0.10
Cytoplasmic	290	464	0.54
Transmembrane Helix	465	484	0.79
Non-Cytoplasmic	485	490	0.61
Transmembrane Helix	491	509	0.67
Cytoplasmic	510	515	0.58