YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PE2R4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIPGVNASF SSTPERLNSP VTIPAVMFIF GVVGNLVAIV VLCKSRKEQK ETTFYTLVCG  60
   61 LAVTDLLGTL LVSPVTIATY MKGQWPGDQA LCDYSTFILL FFGLSGLSII CAMSIERYLA 120
  121 INHAYFYSHY VDKRLAGLTL FAVYASNVLF CALPNMGLGR SERQYPGTWC FIDWTTNVTA 180
  181 YAAFSYMYAG FSSFLILATV LCNVLVCGAL LRMLRQFMRR TSLGTEQHHA AAAAAVASVA 240
  241 CRGHAAASPA LQRLSDFRRR RSFRRIAGAE IQMVILLIAT SLVVLICSIP LVVRVFINQL 300
  301 YQPSVVKDIS RNPDLQAIRI ASVNPILDPW IYILLRKTVL SKAIEKIKCL FCRIGGSGRD 360
  361 GSAQHCSESR RTSSAMSGHS RSFLSRELRE ISSTSHTLLY LPDLTESSLG GKNLLPGTHG 420
  421 MGLTQADTTS LRTLRISETS DSSQGQDSES VLLVDEVSGS QREEPASKGN SLQVTFPSET 480
  481 LKLSEKCI

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.97
Transmembrane Helix	21	43	0.95
Cytoplasmic	44	53	0.90
Transmembrane Helix	54	77	0.91
Non-Cytoplasmic	78	95	0.86
Transmembrane Helix	96	115	0.94
Cytoplasmic	116	134	0.87
Transmembrane Helix	135	158	0.86
Non-Cytoplasmic	159	188	0.89
Transmembrane Helix	189	211	0.91
Cytoplasmic	212	267	0.93
Transmembrane Helix	268	293	0.87
Non-Cytoplasmic	294	488	0.93