YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109469545, gi...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQAARVAWV LGSSRCALSE GLLTRPWTQL SAQSRAGFTR AAAGNRGASI RKGSPRLLGV  60
   61 AALALGGALG LYHTVRWHLR SQDLHAERSA VQLSLSNRLQ LTLYQYKTCP FCSKVRAFLD 120
  121 FHSLPYQVVE VNPVRRTEIK FSSYRKVPIL VAQEGDSLQQ LNDSSVIISA LKTYLVSGQP 180
  181 LEEIITYYPP MKAMNDQGKE VTEFGNKYWL MLDQKEAQQM YGGKEARTEE MKWRQWADDW 240
  241 LVHLISPNVY RTPAEALASF DYIVREGKFG AVEATMAKYV GAAAMYFISK RLKSRHHLQD 300
  301 DVRVDLYEAA NKWVTAVGKD RPFMGGQKPN LADLAVYGVL RVMEGLEAFD DLMRHSHIQP 360
  361 WYLRMERAIK EASSMHCMHP NCKD

Type	Start	End	Confidence
Cytoplasmic	1	55	0.69
Transmembrane Helix	56	75	0.68
Non-Cytoplasmic	76	384	0.98