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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|229472140, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.73
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLSVFLFLL LWAQALTLKN LNYSIPEEKI QGVIGNIAKD AELELGEQGK KSNFRVLENS  60
   61 APHLIDVDPE SGLLYTKQRI DRETLCRQNS KCQLSMEVFA NDKEICMIKV EIQDINDNAP 120
  121 SFPSEQIDID ISENAAPGTR FPLAAAYDPD TKENGLKTYQ ITRDDYSIFS LDVKSRGDGT 180
  181 KFPELVVQRS LDREERSHHT LIITATDGGE YPKSGTMQIN VKVTDSNDNS PVFEQPSYVV 240
  241 EIPENAPLGT VIIDLNATDS DEGINGQVTY SFSCYVPDRI KELFSIDPRT GVIKIQGKID 300
  301 FEENPIIEID VQAKDQGPNP IPGHCKVTVK VLDRNDNWPS IGFVAVRQGA VSEAATPGTV 360
  361 IALVRVTDKD SGRNGQLQCR ILGNVPFKLE ENYDNFYTVV TDRPLDREVK DEYNITIVAK 420
  421 DNGNPPLNST KSFTVKILDE NDNAPRFTKM VYLLQVPENN IPGEYLGSVL AHDPDLGQNG 480
  481 TVSYSLLPSN VSEESITTYV NIKPTDGAIY ALRSFNYEQT KYFDFKVQAK DSGNPHLESN 540
  541 TTVRVSVLDV NDNIPVIVLP LLQNDTAEIH VPRNVGVGHI ITTVRAVDND FGESGRLTYE 600
  601 ISDGNEEHLF EIDSVTGEVR TAQPLWEEVT PVVELIIKVT DHGKPSLSAM AKLIVKAYSG 660
  661 PLPEGEPRIN AEHHNWDMSL PLIVTLSIIS IMLLAAMITI AVKCKRENKE IRTYNCRIAE 720
  721 YSHPQLGKSK KKKINKNDIM LVQSEVEERD TMNVMNVVSS PSLATSPMYF DYQTRLPLSS 780
  781 PRSEVMYLKP TANNLSVPQG HVGCHTSFTG PVTNTTETPV NRMSIIQTDN FPAEPNYMGN 840
  841 RQQFVQSSST FKDPERASLR DSGHGDSDQA DSDQDTNKGS CCDMSAKEAL KMKATGLKPQ 900
  901 PLEQEEDCLN CTEECRVLGH SDRCWMPQFP AGAGGAGTPQ AEGSDYRTNL FVPAGMEAVA 960
  961 VETETYETVC NPNGKKTFCT FGKERRDHTI LVANVKPYLK TKRALSPLLQ EVPSASCSPT1020
 1021 KGCSTGSPCS SAKGMGDGAE GKPSTSHYGP PDGQYISPNK QNKEQGYSTL PPSDPVAKVL1080
 1081 AEARSRISQE TAVEMDCVLE QGGGEMGRST MDADQVVRDI DKLLQDCRGN ENTPIRK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle