YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GBRA3_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITTQMWHFY VTRVGLLLLI SILPGTTGQG ESRRQEPGDF VKQDIGGLSP KHAPDIPDDS  60
   61 TDNITIFTRI LDRLLDGYDN RLRPGLGDAV TEVKTDIYVT SFGPVSDTDM EYTIDVFFRQ 120
  121 TWHDERLKFD GPMKILPLNN LLASKIWTPD TFFHNGKKSV AHNMTTPNKL LRLVDNGTLL 180
  181 YTMRLTIHAE CPMHLEDFPM DVHACPLKFG SYAYTKAEVI YSWTLGKNKS VEVAQDGSRL 240
  241 NQYDLLGHVV GTEIIRSSTG EYVVMTTHFH LKRKIGYFVI QTYLPCIMTV ILSQVSFWLN 300
  301 RESVPARTVF GVTTVLTMTT LSISARNSLP KVAYATAMDW FMAVCYAFVF SALIEFATVN 360
  361 YFTKRSWAWE GKKVPEALEM KKKTPAAPTK KTSTTFNIVG TTYPINLALD TEFSTISKAA 420
  421 AAPSASSTPT VIASPKTTYV QDSPAETKTY NSVSKVDKIS RIIFPVLFAI FNLVYWATYV 480
  481 NRESAIKGMI RKQ

Type	Start	End	Confidence
Signal Peptide	1	28	0.83
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	276	0.91
Transmembrane Helix	277	298	0.84
Cytoplasmic	299	305	0.70
Transmembrane Helix	306	325	0.87
Non-Cytoplasmic	326	339	0.67
Transmembrane Helix	340	362	0.87
Cytoplasmic	363	461	0.80
Transmembrane Helix	462	479	0.84
Non-Cytoplasmic	480	493	0.68