YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RHBG_RAT
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.91
Transmembrane Helix	10	32	0.86
Non-Cytoplasmic	33	60	0.93
Transmembrane Helix	61	79	0.90
Cytoplasmic	80	86	0.68
Transmembrane Helix	87	108	0.87
Non-Cytoplasmic	109	122	0.72
Transmembrane Helix	123	141	0.94
Cytoplasmic	142	148	0.82
Transmembrane Helix	149	171	0.90
Non-Cytoplasmic	172	178	0.78
Transmembrane Helix	179	198	0.93
Cytoplasmic	199	211	0.90
Transmembrane Helix	212	231	0.92
Non-Cytoplasmic	232	250	0.87
Transmembrane Helix	251	270	0.85
Cytoplasmic	271	277	0.76
Transmembrane Helix	278	295	0.83
Non-Cytoplasmic	296	301	0.62
Transmembrane Helix	302	323	0.88
Cytoplasmic	324	340	0.85
Transmembrane Helix	341	362	0.88
Non-Cytoplasmic	363	390	0.84
Transmembrane Helix	391	412	0.91
Cytoplasmic	413	455	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARIPRHRRL VLPLLCLLFQ GATSLLFAIF VRYNHETDAA LWHWGNHSNV DNEFYFRYPS  60
   61 FQDVHVMVFV GFGFLMVFLQ RYGFSSVGFT FLVATFTLQW ATLLQGFLHS FHGGHIHIGV 120
  121 ESLINADFCA GAVLISFGAV LGKTGPAQLL LMALLEAVLF SVNEFILLSL LGVRDAGGSM 180
  181 TIHTFGAYFG LFLSRVLYRS QLEKSRHRQT SVYNSDLFAM IGTIFLWVFW PSFNSAPTAL 240
  241 GDGQHRTVVN TYYSLTASTL STFALSALVS GDGRLDMVHI QNAALAGGVV VGTASEMMLT 300
  301 PFGALAAGFL AGTVSTLGYK FFTPILESRF KLQDTCGVHN LHGMPGLLGA ILGVLVAALA 360
  361 THEAYGDGLQ TVFPLIAKGQ RSATSQAMYQ LFGMFVTLVF ASVGGSLGGL LLKLPFLDSP 420
  421 PDSQCFEDQV YWEVPGEQEA ETQRPLRTEE PDTQA