YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|192447409, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLALAALRL MCLAWLWPVA WLKGSNTQNQ RRHKDVYLGE NTKHKFGGRI DFKTKKSDST  60
   61 KSLLIKSEQL LRIEDHDFAM RPGFGGSAIP VGIDVQVESI DGISEVNMDF TMTLYLRHYW 120
  121 QDDRLAFPSS NNKSRTFDAR LVKKIWVPDV FFVHSKRSFI HDTTMENIML RVFPDGNILY 180
  181 SVRITVTALC SMDFSRFPLD TQNCSLELES YAYNENDLML YWKNGNDSLR TDEIALSQFF 240
  241 IEEFHPSYGL AFYSSTGWYN RLYINFILRR HIFFFMLQTY FPTMLMVMLS WVSFWIDRRA 300
  301 VPARVSLGIT TVLTMSTIIT GVSASMPQVS YVKAVDIYLW ASFLFVFLSV IEYAAVNYFT 360
  361 TVEEMKKLQK GKLPASYDAT QAMAYDGCFH DDIDASPFPE LPTTPSTTRT IPARASSTEP 420
  421 PPTEGTRLWR KRSVGKNIRF IMSNSYMIDS YSRILFPLAY LLFNIIYWCI YS

Type	Start	End	Confidence
Signal Peptide	1	22	0.97
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	273	0.98
Transmembrane Helix	274	295	0.92
Cytoplasmic	296	304	0.81
Transmembrane Helix	305	326	0.89
Non-Cytoplasmic	327	336	0.83
Transmembrane Helix	337	360	0.89
Cytoplasmic	361	450	0.95
Transmembrane Helix	451	471	0.84
Non-Cytoplasmic	472	472	0.90