YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169154733, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNYSQNYHN ESLTRRQEPQ NCYMDNTSLR IPLAVFYTLF FLFGFAGNLL ALWVFLRLHP  60
   61 KKNSVRIFLI NLALADILLV ICLPFRVAYH FNNNQWVLPS LLCRIVGNVF YMNMYISIAL 120
  121 LGFISVDRYL KFHRASSRRW FLQSHWSAIV CGVLWAVSIA GVSPFIVKTE NNNETHQCFQ 180
  181 YKKLCDSKWK AYFNFVIVAI FWVVYGALVM SYGRIGMKLI TASRDKPDFP NAAKYNKTAW 240
  241 KSFFVLFTFT VCYAPYHFVR IFYIMSQMAP NVSCNKMNVL DKTNEVVLLL SALNSCLDPV 300
  301 MYFLLCSSIR KVTLKFICNC FCQQTNNALN SSSDEQPKIM TVVPKTICQD IKKATIIIK

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.99
Transmembrane Helix	33	56	0.92
Cytoplasmic	57	66	0.91
Transmembrane Helix	67	88	0.95
Non-Cytoplasmic	89	108	0.81
Transmembrane Helix	109	126	0.93
Cytoplasmic	127	144	0.79
Transmembrane Helix	145	166	0.89
Non-Cytoplasmic	167	195	0.92
Transmembrane Helix	196	216	0.90
Cytoplasmic	217	238	0.93
Transmembrane Helix	239	259	0.87
Non-Cytoplasmic	260	286	0.89
Transmembrane Helix	287	306	0.61
Cytoplasmic	307	359	0.66