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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CCD80_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWKMGPHFT MLLAMWLVCG SASQSSALDS DGRPGRKVPL ASPISSRSAR YLRHTGRSGG  60
   61 VEKSTQEEPN PQSFQRRKSV PVLRLAHPTV RPPPSGINGA PVRPELKPIA RGSASEMVRD 120
  121 EGSSARTRML RFPSGSSSPN ILASFAGKNR VWVISAPHAS EGYYRLMMSL LKDDVYCELA 180
  181 ERHIQQIVLF HQAGEEGGKV RRITSEGQIL EQPLDPNLIP KLMSFLKLEK GKFSMVLLKK 240
  241 TLQVEERYPY PVRLEAMYEV IDQGPIRRIE KIRQKGFVQK CKASGIEGHV VQEGNNGGGG 300
  301 GGSTGLGSDK RKEDPRRTQI HPTREPPRKQ TTTKAATPQP PPTPRATTLP PAPVTTATRA 360
  361 TSRVVTVAAR PTTTTAYPAT QRPWTSRLHP FSVSHRPPAT AEMTTVRGPS VSEQLYPLPR 420
  421 KEQQREKPQA TRRPNKATNY GSFTATPPTT LWEGSTRAVG TSRFRDNRTD KREHGHQDPN 480
  481 VVPGPHKPIK GKLPKKKEKI LSNEYEAKYD LSRPTTSQGE EELQVDNIPS QNAKESKKHE 540
  541 KPEKPEKEKK KKGKSAKPDK LLRSEKQMKK AEKKSKQEKE KTKKKKAGKT EQDDYQKPTA 600
  601 KHLAPSPRKS VADLLGSFEG KRRLLLITTP KAENNMYVQQ RDEYLESFCK MATRRISVVT 660
  661 IFGPVNNSSM KIDHFQLDNE KPMRVVDDED LVDQHLISEL RKEYGMTYND FFMVLTDVDL 720
  721 RVKQYYEVPI AMKSVFDLID TFQSRIKDME KQKKEGITCK EDKRQSLENF LSRFRWRRRL 780
  781 LVISAPNDED WAYSQQLSAL NGQACNFGLR HITILKLLGV GEEVGGILEL FPINGSSTVE 840
  841 REDVPAHLVK DIRNYFQVSP EYFSMLLVGK DGNVKSWYPS PMWSMVIVYD LIDSMQLRRQ 900
  901 EMAIQQSLGM RCPEDEYAGY GYHSYHQGYQ DGYQDDYRHH ESYHHGYPY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle