YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SOAT_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.94
Transmembrane Helix	32	53	0.91
Cytoplasmic	54	65	0.92
Transmembrane Helix	66	88	0.92
Non-Cytoplasmic	89	96	0.78
Transmembrane Helix	97	119	0.92
Cytoplasmic	120	126	0.88
Transmembrane Helix	127	149	0.90
Non-Cytoplasmic	150	161	0.85
Transmembrane Helix	162	184	0.89
Cytoplasmic	185	191	0.91
Transmembrane Helix	192	216	0.90
Non-Cytoplasmic	217	222	0.89
Transmembrane Helix	223	246	0.92
Cytoplasmic	247	260	0.84
Transmembrane Helix	261	283	0.79
Non-Cytoplasmic	284	288	0.76
Transmembrane Helix	289	310	0.92
Cytoplasmic	311	370	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADCEGNST CPANSTEEDP PVGMEGQGSL KLVFTVLSAV MVGLVMFSFG CSVESRKLWL  60
   61 HLRRPWGIAV GLLCQFGLMP LTAYLLAIGF GLKPFQAIAV LIMGSCPGGT VSNVLTFWVD 120
  121 GDMDLSISMT TCSTVAALGM MPLCLYVYTR SWTLPQSLTI PYQSIGITLV SLVVPVASGI 180
  181 YVNYRWPKQA TFILKVGAAV GGMLLLVVAV TGVVLAKGWN IDVTLLVISC IFPLVGHVMG 240
  241 FLLAFLTHQS WQRCRTISIE TGAQNIQLCI AMMQLSFSAE YLVQLLNFAL AYGLFQVLHG 300
  301 LLIVAAYQAY KRRQKSQYRR QHPECQDISS EKQPRETSAF LDKGAEAAVT LGLEQHHRTA 360
  361 ELTSHVPSCE