YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125849304, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAEAVIRGL LFLSLVLVGV PGNTAVICGF ILLVRREGRL SPADAIVLHL CSANLVVVSV  60
   61 RCLLEVLATF RIHNVFDDAG CRAVIFLHRT ARSLSIWLTF LLTALQCLSV APPGSRRAAA 120
  121 RALLARSLPA IFLALWLINT SMSVASLLYS IGARNDSRLL QNAINVEFCF LSFPSRLARD 180
  181 ANGAAQVARD VVPMVLMAAG SLVLLVYLVR QRRRVQGLRG TAGGAAERRA AVTVVTLVSL 240
  241 YLLVFGLDNG LWVYTLTVSH TLSSALITDL RLFFTSLYTA VSPLLILVSN TRLRCGKQPE 300
  301 TMH

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.65
Transmembrane Helix	10	34	0.89
Cytoplasmic	35	44	0.66
Transmembrane Helix	45	67	0.73
Non-Cytoplasmic	68	92	0.76
Transmembrane Helix	93	112	0.85
Cytoplasmic	113	127	0.71
Transmembrane Helix	128	151	0.82
Non-Cytoplasmic	152	190	0.88
Transmembrane Helix	191	209	0.97
Cytoplasmic	210	229	0.94
Transmembrane Helix	230	252	0.88
Non-Cytoplasmic	253	269	0.86
Transmembrane Helix	270	289	0.88
Cytoplasmic	290	303	0.84