YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|160333320, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESFGFSVTE STDVTTPDDP FKGPLKSVAP WNYTFLACLM FIVTSLSITE NFTVMLVTYR  60
   61 FKQLRKPLNY IIVNLSVADF LVSMTGGTIS FLTNARGFFF LGVWACVLEG FAVTFFGIVA 120
  121 LWSLAILAFE RFFVICRPLK NVRLGGKHAA MGLIFVWTFS FIWTIPPVLG WNSYTVSKIG 180
  181 TTCEPNWYST NYYDHTYIIT FFVTCFILPL GVIIISYGKL MQKLRKVSNT HGRLGNARKP 240
  241 DREVARMVVV MIVAFMVGWT PYAAFSITVT ACPTIYIDPR LGSIPAFFSK TAAVYNPIIY 300
  301 VFMNKQFRKC LIQMFKGNGT ALESTNLNQT SDKGPITATA DTHLGEMSTI AARVPMSMCN 360
  361 MEKSEEEEEE PEQSGNGGPK QLPLSDSRVC PL

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.92
Transmembrane Helix	33	54	0.85
Cytoplasmic	55	69	0.80
Transmembrane Helix	70	92	0.91
Non-Cytoplasmic	93	104	0.74
Transmembrane Helix	105	129	0.82
Cytoplasmic	130	143	0.87
Transmembrane Helix	144	165	0.88
Non-Cytoplasmic	166	196	0.91
Transmembrane Helix	197	218	0.95
Cytoplasmic	219	246	0.92
Transmembrane Helix	247	265	0.93
Non-Cytoplasmic	266	283	0.76
Transmembrane Helix	284	304	0.69
Cytoplasmic	305	392	0.77