YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|151358244, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSTQDKLVA WLLIGVLAIL TIFFNMYLLL VNYRSYRKKH KLNPADFIIT AIAIASISQQ  60
   61 VLTYSWQTMD VIDTVCQISL VEAILLVLVF SVKLIIFWST AFLTFYYGTK LVVEPVHCYT 120
  121 RIQEAIVKHV HIVLTVIVVS GFANCVPLLS VLTYYNGTTE LGDCGSIMPS DTPGLVYVFY 180
  181 YVVISDIIPG IVMFKCSISI SYHLAKHLLD MKASSNGTHG PKLGTQMRVI KMTLSLVFVY 240
  241 SCFVVVDIYT QTTVVLMRQN TLALIMLFAS IYTTVSAFVL IYGKKSYWKE LIASYNLFLD 300
  301 EYPCLNKMKV EEVKHEPHEH SHGH

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.97
Transmembrane Helix	8	31	0.92
Cytoplasmic	32	41	0.93
Transmembrane Helix	42	63	0.86
Non-Cytoplasmic	64	82	0.79
Transmembrane Helix	83	107	0.78
Cytoplasmic	108	129	0.91
Transmembrane Helix	130	152	0.91
Non-Cytoplasmic	153	176	0.92
Transmembrane Helix	177	198	0.89
Cytoplasmic	199	231	0.90
Transmembrane Helix	232	251	0.91
Non-Cytoplasmic	252	261	0.78
Transmembrane Helix	262	282	0.96
Cytoplasmic	283	324	0.98