YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAR1_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	114	0.98
Transmembrane Helix	115	136	0.94
Cytoplasmic	137	145	0.86
Transmembrane Helix	146	166	0.94
Non-Cytoplasmic	167	183	0.86
Transmembrane Helix	184	205	0.88
Cytoplasmic	206	225	0.82
Transmembrane Helix	226	246	0.94
Non-Cytoplasmic	247	277	0.96
Transmembrane Helix	278	301	0.89
Cytoplasmic	302	318	0.92
Transmembrane Helix	319	341	0.93
Non-Cytoplasmic	342	355	0.84
Transmembrane Helix	356	379	0.90
Cytoplasmic	380	432	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPRRLLLVA VGLSLCGPLL SSRVPMRQPE SERMYATPYA TPNPRSFFLR NPSEDTFEQF  60
   61 PLGDEEEKNE SIPLEGRAVY LNKSRFPPMP PPPFISEDAS GYLTSPWLTL FIPSVYTFVF 120
  121 IVSLPLNILA IAVFVFRMKV KKPAVVYMLH LAMADVLFVS VLPFKISYYF SGTDWQFGSG 180
  181 MCRFATAACY CNMYASIMLM TVISIDRFLA VVYPIQSLSW RTLGRANFTC VVIWVMAIMG 240
  241 VVPLLLKEQT TQVPGLNITT CHDVLNETLL HGFYSYYFSA FSAIFFLVPL IISTVCYTSI 300
  301 IRCLSSSAVA NRSKKSRALF LSAAVFCIFI VCFGPTNVLL IVHYLLLSDS PGTETAYFAY 360
  361 LLCVCVTSVA SCIDPLIYYY ASSECQKHLY SILCCRESSD SNSCNSTGQL MPSKMDTCSS 420
  421 HLNNSIYKKL LA