YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148357114, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.93
Transmembrane Helix	30	49	0.91
Non-Cytoplasmic	50	58	0.82
Transmembrane Helix	59	81	0.85
Cytoplasmic	82	108	0.82
Transmembrane Helix	109	129	0.92
Non-Cytoplasmic	130	193	0.97
Transmembrane Helix	194	214	0.92
Cytoplasmic	215	223	0.84
Transmembrane Helix	224	245	0.85
Non-Cytoplasmic	246	275	0.83
Transmembrane Helix	276	296	0.89
Cytoplasmic	297	304	0.90
Transmembrane Helix	305	327	0.91
Non-Cytoplasmic	328	360	0.84
Transmembrane Helix	361	378	0.90
Cytoplasmic	379	408	0.85
Transmembrane Helix	409	431	0.91
Non-Cytoplasmic	432	440	0.78
Transmembrane Helix	441	463	0.91
Cytoplasmic	464	483	0.94
Transmembrane Helix	484	503	0.97
Non-Cytoplasmic	504	518	0.87
Transmembrane Helix	519	541	0.89
Cytoplasmic	542	590	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSSTRRTG NQQADITPEE RGQWANKIEF LLTVAGAIIG LGNVWRFPYL CYKNGGGAFF  60
   61 IPYVLYLVTC GIPLFVLETS LGQYTSQGGI MCWRKVCPLF EGMGYASQLI IVYGSITYII 120
  121 IIAWAFLYLF SSFNVELPWA SCNNPWNTDT CIVLSGRNSS SELASPLNSS SSVMEFWHHR 180
  181 VLRLSSGVEH LGTVRWDLAL ILLLVWILVY FCIWKGVKST GKAVYFTATF PYVMLLILLL 240
  241 RGVTLPGALN GIYYYMYPDL TRLADPQVWM DAGTQIFYSY AICLGYLSSL GSYNQYNNNC 300
  301 YRDSFYLCLL NSGTSFLGGF AIFSVLGHMA QEQGVDISLV AESGPGLVFI VYPQAVTMLP 360
  361 LSQFWAVCFF IMIILLGLDS QFVGLESIMT SVTDIFPTVL RRGFRREMLL LGICLVCYFM 420
  421 GLLMITEGGL YIIQLFDHYV CSGTTLLFLA TCQSVAIGWV YGADRFYENI QDMIGYKPWP 480
  481 MVKYCWLYVT PSVCVGTFIF SLVKYSPLKF NNKYMYPWWA YGIGWFLAVS SLSLIPINMI 540
  541 YKLHKGKGTF WERLQLACSP AEDLPQSQRP SAHHYTLSAS TDREKSPDNL