YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|206149603, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.94
Transmembrane Helix	54	71	0.53
Non-Cytoplasmic	72	93	0.50
Transmembrane Helix	94	128	0.65
Cytoplasmic	129	174	0.44
Transmembrane Helix	175	198	0.87
Non-Cytoplasmic	199	253	0.64
Transmembrane Helix	254	272	0.89
Cytoplasmic	273	283	0.84
Transmembrane Helix	284	304	0.92
Non-Cytoplasmic	305	335	0.87
Transmembrane Helix	336	355	0.87
Cytoplasmic	356	371	0.82
Transmembrane Helix	372	394	0.62
Non-Cytoplasmic	395	406	0.55
Transmembrane Helix	407	428	0.80
Cytoplasmic	429	465	0.78
Transmembrane Helix	466	498	0.81
Non-Cytoplasmic	499	808	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRHEGYHV KREVINEQRL KERSQRMNPS QINLPISHRL KTSFSCSVPR IKRSIVGFLP  60
   61 VLSWLPRYSI WDYGMPDLIS GISVGIMHLP QGMAYALLAS LPPVFGLYTS LYPSLIYFIF 120
  121 GTSRHISVGT FTILSIMIGS VTERLAPDTD FLIYNGTNVT GEVDIASRDL YRVQVAAAAT 180
  181 VLGGLIQVVL GLVQFGFVGT YLSEPLVRGY TTAASAHAVV AQLKYILGVS PKRFNGPLSI 240
  241 VYTLVDLFTL LPETHLPTLV ASVVSIVVLI TAKELNNALK KKMIIPIPVE LCTIVVATVI 300
  301 SFYTRLNESY KISVVGDIPS GLQPPSVPNV YIFSEVVLDA FAMAIVGYAI SISLGKTFAL 360
  361 KHGYKVESNQ ELVALGLSNT VGGFFQCFSV CSSMSRSLIQ ESTGGKTQIA GVVSGVIVLV 420
  421 TVLKLGSLFQ ELPKAVLSAI VFVNLKGMFK QYYDIVTLWR SNKIDLLIWL VTFVSTVLFN 480
  481 LDMGLGASMG FALLTVIFRT QRPSYSLLGH LPGTELYLDM ETHKEVREVP GITIFRSSAT 540
  541 MYFANAELYL EALKKKSGLD IGKMLTYKRR QEAKQKRRER RAERRARREA KRQKKAFREA 600
  601 SQRSKHAVFS VEEEAGQLSD MNGDLHREAE IGWKERENNT VFVIPETART SDGQHTWMYL 660
  661 KGTDPDTATL GSVSDLHDAD VTTIDSSSED TLSRDLERVS LGSLGKWTWD IHSIILDLST 720
  721 ANFIDTVAIK TLRNIFHDFG EIDVHIYMAG CQELVMKQLE RGGFFSDVIT EACVFATVHD 780
  781 AVLYCVKHHG AATINGHENA LDMSGTRL