YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LITAF_RAT
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPGPYQAA AGPSVMPTAP PTYEETVGVN SYYPTPPAPQ PGPATGLITG PDGKGMNPPS  60
   61 YYTQPVPVPN ANAIAVQTVY VQQPISFYDR PIQMCCPSCN KMIVTQLSYN AGALTWLSCG 120
  121 SLCLLGCVAG CCFIPFCVDA LQDVDHYCPN CKALLGTYKR L

Type	Start	End	Confidence
Cytoplasmic	1	112	0.60
Transmembrane Helix	113	137	0.61
Non-Cytoplasmic	138	161	0.90