YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYAC3_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGIVGFYIT YLLCLILGIA CVVLVVHWNF MYRDGFAWDG SSKNFNWHPV LMVTGMLVLY  60
   61 GNAAVVYRIP LTWGHNKLPW KLLHAGLLLL SFIFSVIGLC AVFNFHNVHH TANLYSLHSW 120
  121 VGICTAALFT AQWVMGFTSF LLPCTPMAVR AFVKPTHVWM GAMILVLSIV SCISGINEKL 180
  181 FFVLKETTNG TKPYSALPPE AVAANSLGVI IVAFGLVVLK ILSNQMWQRP EPGDDEGVYR 240
  241 PLAYDGS

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	28	0.94
Non-Cytoplasmic	29	46	0.89
Transmembrane Helix	47	69	0.88
Cytoplasmic	70	81	0.87
Transmembrane Helix	82	105	0.89
Non-Cytoplasmic	106	118	0.80
Transmembrane Helix	119	142	0.84
Cytoplasmic	143	155	0.84
Transmembrane Helix	156	177	0.90
Non-Cytoplasmic	178	200	0.90
Transmembrane Helix	201	222	0.91
Cytoplasmic	223	247	0.97