YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIDC1_RAT
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAPPPAPRS RLCGAWGPFP RVFAAGAVAA DSQSFVEDPE LRSYVSDPGS SESGWDRLRQ  60
   61 LFVKDEQRKI SKEMDYICRA ALSAGIIGWA YGGIPAFIYA KRRYIEQSQA EIYHNRFDAV 120
  121 QSAHRAATRG FIRYGWRWSW RTAVFVTIFN TVNTGLTVYR NKDALSHFAI AGAVTGGLFR 180
  181 INLGLRGLVA GGIIGALLGT PMGSLLMALE KHCGETVQER RQKDREAQQE QRLEEWRRNL 240
  241 QVTELLPMEI ESGLEKIQPE KDAQRIEELL RLPRNPASPD KQSED

Type	Start	End	Confidence
Cytoplasmic	1	75	0.75
Transmembrane Helix	76	99	0.73
Non-Cytoplasmic	100	137	0.61
Transmembrane Helix	138	159	0.77
Cytoplasmic	160	163	0.52
Transmembrane Helix	164	183	0.64
Non-Cytoplasmic	184	187	0.44
Transmembrane Helix	188	209	0.79
Cytoplasmic	210	285	0.67