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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NRX2B_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPGGSGQGG CPRRPPALAG PLPPPPPPPP LPLLLGLLLL LGAAEGARVS SSLSTTHHVH  60
   61 HFHSKHGTVP IAINRMPFLT RSGHAGTTYI FGKGGALITY TWPPNDRPST RMDRLAVGFS 120
  121 THQRSAVLVR VDSASGLGDY LQLHIDQGTV GVIFNVGTDD ITIDEPNAIV SDGKYHVVRF 180
  181 TRSGGNATLQ VDSWPVNERY PAGNFDNERL AIARQRIPYR LGRVVDEWLL DKGRQLTIFN 240
  241 SQAAIKIGGR DQGRPFQGQV SGLYYNGLKV LALAAESDPN VRTEGHLRLV GEGPSVLLSA 300
  301 ETTATTLLAD MATTIMETTT TMATTTTRRG RSPTMRDSTT QNTDDLLVAS AECPSDDEDL 360
  361 EECEPSTGGE LILPIITEDS LDPPPVATRS PFVPPPPTFY PFLTGVGATQ DTLPPPAARR 420
  421 PSSGGPCQAE RDDSDCEEPV EASGFASGEV FDSSLPPTDD EDFYTTFPLV TDRTTLLSPR 480
  481 KPAPRPNLRT DGATGAPGVL LAPSAPAPNL PAGKMNHRDP LQPLLENPPL GPGVPTAFEP 540
  541 RRPPPLRPGV TSVPGFPRLP TANPTGPGER GPPGAVEVIR ESSSTTGMVV GIVAAAALCI 600
  601 LILLYAMYKY RNRDEGSYQV DQSRNYISNS AQSNGAVVKE KAPAAPKTPS KAKKNKDKEY 660
  661 YV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle