YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACHB3_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGFLRVFLV LSATLSGSWV TLTATAGLSS VAEHEDALLR HLFQGYQKWV RPVLNSSDII  60
   61 KVYFGLKISQ LVDVDEKNQL MTTNVWLKQE WTDQKLRWNP EEYGGINSIK VPSESLWLPD 120
  121 IVLFENADGR FEGSLMTKAI VKSSGTVSWT PPASYKSSCT MDVTFFPFDR QNCSMKFGSW 180
  181 TYDGTMVDLI LINENVDRKD FFDNGEWEIL NAKGMKGNRR EGFYSYPFVT YSFVLRRLPL 240
  241 FYTLFLIIPC LGLSFLTVLV FYLPSDEGEK LSLSTSVLVS LTVFLLVIEE IIPSSSKVIP 300
  301 LIGEYLLFIM IFVTLSIIVT VFVINVHHRS SSTYHPMAPW VKRLFLQRLP RWLCMKDPMD 360
  361 RFSFPDGKES DTAVRGKVSG KRKQTPASDG ERVLVAFLEK ASESIRYISR HVKKEHFISQ 420
  421 VVQDWKFVAQ VLDRIFLWLF LIASVLGSIL IFIPALKMWI HRFH

Type	Start	End	Confidence
Signal Peptide	1	26	0.97
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	239	0.99
Transmembrane Helix	240	263	0.92
Cytoplasmic	264	270	0.93
Transmembrane Helix	271	292	0.89
Non-Cytoplasmic	293	304	0.81
Transmembrane Helix	305	326	0.93
Cytoplasmic	327	434	0.98
Transmembrane Helix	435	456	0.95
Non-Cytoplasmic	457	464	0.84