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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NCKX1_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLIRMGTQ ERRLLRPKRL HWSRLLFFLG MLIIGSTYQH LRRPQNPPSM WTKVSSQQPI  60
   61 KLAIRDLPND EITVTDKDPP EASSEVEGEM LAPQDTVIIG EAAPSIAMED TPNPPITTKI 120
  121 TPTSLKNNYS PTTAGTRRQK ENIPPTPSRA PSHFISTSGR QRVKSYTPKP RGGRKSSSPT 180
  181 HTREEGRMHT PSPAGAPRTI SPTSTEKDSE TTATYRMLEP RSERTAGKTS LKRMVPNTRT 240
  241 FLTREVETDL VTSPSLVGKN TLGSPRRGER NSSTTPLRAV LQPTPATSEE QVTASIRMGS 300
  301 TPATTEGSTA AQRIGNPLSG TSTPAVRIAS VTDREKRPST AHGTLVTPQV KAVLTTQVHR 360
  361 CVVVKPAPAV PMTPSPSMTA ILFPEAPTSG PSALPPGWPN LHPKAEYPPD LFSVEDRRQG 420
  421 WVVLHIFGMT YVFVALAIVC DEYFVPALGV ITDKLQISED VAGATFMAAG GSAPELFTSL 480
  481 IGVFISHSNV GIGTIVGSAV FNILFVIGTC ALFSREILNL TWWPLFRDVS FYILDLSMLI 540
  541 VFFLDSLIAW WESLLLLLAY ALYVFTMKWN KQIERWVKEQ LSRRPVAKVM ALGDLSKPSD 600
  601 GAIEENEQQD NKKLKLPSVL TRGSSSASLH NSIIRSTIYH LMLHSLDPLG EARPSKDKQE 660
  661 SLNQEARVLP QTKAESSSDE EEPAELPAVT VTPAPAPEDK GDQEEDPGCQ EDVDEAEHRG 720
  721 DMTGEEGERE TEAEGKKDEE GETEAERKED GQEEETETKG KEKQEGETES EGKDEQEGET 780
  781 EAEGKEADHE GETEAEGKEV EHEGETEAEG TEDEQEGETE AEGKEVEQEG ETEAEGKEVE 840
  841 HEVETEAERK ETNHEGETEA EGKEADHEGE TEAEGNVEHQ GETEAEGKVE HEGETEAGEK 900
  901 DEHEGQSETQ ADDTEVKDGE GEAEANAEDQ CETAQGEKGA DGGGGSDGGD SEEEEDEEDE 960
  961 EEEEEEEEEE EEEESEEPLS LEWPESRQKQ AIYLFLLPIV FPLWLTIPDV RRQEARKFFV1020
 1021 ITFLGSIIWI AMFSYLMVWW AHQVGETIGI SEEIMGLTIL AAGTSIPDLI TSVIVARKGL1080
 1081 GDMAVSSSVG SNIFDITVGL PVPWLLFSLI NALQPIPVSS NGLFCAIVLL FLMLLFVIFS1140
 1141 IASCKWRMNK ILGFTMFLLY FVFLVISVML EDRIISCPVS V

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