YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	26	0.87
Non-Cytoplasmic	27	93	0.94
Transmembrane Helix	94	116	0.90
Cytoplasmic	117	125	0.82
Transmembrane Helix	126	147	0.85
Non-Cytoplasmic	148	151	0.64
Transmembrane Helix	152	175	0.84
Cytoplasmic	176	186	0.80
Transmembrane Helix	187	210	0.87
Non-Cytoplasmic	211	215	0.86
Transmembrane Helix	216	237	0.93
Cytoplasmic	238	301	0.97
Transmembrane Helix	302	324	0.79
Non-Cytoplasmic	325	336	0.75
Transmembrane Helix	337	358	0.93
Cytoplasmic	359	365	0.91
Transmembrane Helix	366	388	0.93
Non-Cytoplasmic	389	398	0.75
Transmembrane Helix	399	421	0.86
Cytoplasmic	422	431	0.91
Transmembrane Helix	432	456	0.86
Non-Cytoplasmic	457	461	0.70
Transmembrane Helix	462	480	0.97
Cytoplasmic	481	522	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDKITGTL AFTVFTAVLG SFQFGYDIGV INAPQEVIIS HYRHVLGVPL DDRRATINYD  60
   61 INGTDTPLIV TPAHTTPDAW EEETEGSAHI VTMLWSLSVS SFAVGGMVAS FFGGWLGDKL 120
  121 GRIKAMLAAN SLSLTGALLM GCSKFGPAHA LIIAGRSVSG LYCGLISGLV PMYIGEIAPT 180
  181 TLRGALGTLH QLALVTGILI SQIAGLSFIL GNQDYWHILL GLSAVPALLQ CLLLLFCPES 240
  241 PRYLYLNLEE EVRAKKSLKR LRGTEDITKD INEMRKEKEE ASTEQKVSVI QLFTDPNYRQ 300
  301 PIVVALMLHL AQQFSGINGI FYYSTSIFQT AGISQPVYAT IGVGAINMIF TAVSVLLVEK 360
  361 AGRRTLFLAG MIGMFFCAVF MSLGLVLLDK FTWMSYVSMT AIFLFVSFFE IGPGPIPWFM 420
  421 VAEFFSQGPR PTALALAAFS NWVCNFIIAL CFQYIADFLG PYVFFLFAGV VLVFTLFTFF 480
  481 KVPETKGKSF DEIAAEFRKK SGSAPPRKAT VQMEFLGSSE TV