YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5A6_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.90
Transmembrane Helix	28	47	0.93
Cytoplasmic	48	65	0.93
Transmembrane Helix	66	87	0.92
Non-Cytoplasmic	88	97	0.83
Transmembrane Helix	98	121	0.87
Cytoplasmic	122	141	0.85
Transmembrane Helix	142	162	0.92
Non-Cytoplasmic	163	174	0.76
Transmembrane Helix	175	195	0.89
Cytoplasmic	196	206	0.69
Transmembrane Helix	207	232	0.81
Non-Cytoplasmic	233	252	0.93
Transmembrane Helix	253	273	0.92
Cytoplasmic	274	292	0.89
Transmembrane Helix	293	316	0.90
Non-Cytoplasmic	317	349	0.92
Transmembrane Helix	350	374	0.86
Cytoplasmic	375	394	0.89
Transmembrane Helix	395	416	0.89
Non-Cytoplasmic	417	424	0.66
Transmembrane Helix	425	447	0.88
Cytoplasmic	448	452	0.73
Transmembrane Helix	453	475	0.86
Non-Cytoplasmic	476	526	0.74
Transmembrane Helix	527	549	0.87
Cytoplasmic	550	634	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVASTAAPS YTTSDTNRVI STFSVVDYVV FGLLLVLSLV IGLYHACRGW GRHTVGELLM  60
   61 ADRKMGCLPV ALSLLATFQS AVAILGGPAE IYRFGTQYWF LGCSYFLGLL IPAHIFIPVF 120
  121 YRLHLTSAYE YLELRFNKAV RICGTVTFIF QMVVYMGVAL YAPSLALNAV TGFDLWLSVL 180
  181 ALGIVCNIYT ALGGLKAVIW TDVFQTLIMF LGQLVVIIVG AAKVGGLGHV WAVASQHGLI 240
  241 SGIELDPDPF VRHTFWTLAF GGVFMMLSLY GVNQAQVQRY LSSHSEKAAV LSCYAVFPCQ 300
  301 QVALCMSCLI GLVMFAYYKK YSMSPQQEQA APDQLVLYFV MDLLKDMPGL PGLFVACLFS 360
  361 GSLSTISSAF NSLATVTMED LIQPWFPQLT ETRAIMLSRS LAFAYGLVCL GMAYVSSHLG 420
  421 SVLQAALSIF GMVGGPLLGL FCLGMFFPCA NPLGAIVGLL TGLTMAFWIG IGSIVSRMSS 480
  481 AAASPPLNGS SSFLPSNLTV ATVTTLMPST LSKPTGLQQF YSLSYLWYSA HNSTTVIAVG 540
  541 LIVSLLTGGM RGRSLNPGTI YPVLPKLLAL LPLSCQKRLC WRSHNQDIPV VTNLFPEKMG 600
  601 NGALQDSRDK ERMAEDGLVH QPCSPTYIVQ ETSL