YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169145204, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTWTNRSNC SFNCSWDDNA TYWGIEQPVN IFPIPVLTGV TVTCVLFFFV GVTGNLMTIL  60
   61 VVTKYKDMRT TTNLYLSSMA FSDLLIFLCM PLDLYRIWRY RPWNFGNILC KLFQFVSECC 120
  121 TYSTILNITA LSVERYFAIC FPLRAKVVVT KGRVRGVILV LWIVSFFSAG PVFVLVGVEH 180
  181 ENGTNSWDTN ECKATEYAIR SGLLTIMVWV SSIFFFLPVF CLTVLYSLIG RKLWKRKRET 240
  241 IGENASSRDK SNRQTVKMLA VVVFAFVLCW LPFHVGRYLI SKSTEMGSPV MSIISHYCNL 300
  301 ISFVLFYLSA AINPILYNIM SKKYRMAACK LFGLRNIPRR STSVAKGESS PCWTESTASL 360
  361

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.58
Transmembrane Helix	31	62	0.73
Cytoplasmic	63	73	0.51
Transmembrane Helix	74	95	0.87
Non-Cytoplasmic	96	113	0.49
Transmembrane Helix	114	133	0.45
Cytoplasmic	134	155	0.83
Transmembrane Helix	156	177	0.92
Non-Cytoplasmic	178	205	0.96
Transmembrane Helix	206	229	0.90
Cytoplasmic	230	254	0.95
Transmembrane Helix	255	276	0.90
Non-Cytoplasmic	277	292	0.93
Transmembrane Helix	293	317	0.88
Cytoplasmic	318	360	0.98