YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169646828, gi...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVSNLSVLS CRRNSALCLG AVEGHLEASS SYRTLSPTGH ILVAVSLGFI GTFGFLNNLL  60
   61 VLVLFGRYKV LRSPINFLLV NICLSDLLVC VLGTPFSFAA STQGRWLIGD TGCVWYGFAN 120
  121 SLLGIVSLIS LAVLSYERYC TMMGSTEADA TNYKKVIGGV LMSWIYSLIW TLPPLFGWSR 180
  181 YGPEGPGTTC SVDWTTKTAN NISYIICLFI FCLIVPFLVI IFCYGKLLHA IKQVSSVNTS 240
  241 VSRKREHRVL LMVITMVVFY LLCWLPYGIM ALLATFGAPG LVTAEASIVP SILAKSSTVI 300
  301 NPVIYIFMNK QFYRCFRALL NCDKPQRGSS LKSSSKTKPF RPGRRTDNFT FMVASVGPNQ 360
  361 TNPVEDGPPS ADNTKPAVLS LVAHYNG

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.80
Transmembrane Helix	41	65	0.88
Cytoplasmic	66	76	0.85
Transmembrane Helix	77	99	0.92
Non-Cytoplasmic	100	113	0.90
Transmembrane Helix	114	136	0.91
Cytoplasmic	137	155	0.90
Transmembrane Helix	156	176	0.90
Non-Cytoplasmic	177	201	0.95
Transmembrane Helix	202	228	0.87
Cytoplasmic	229	248	0.97
Transmembrane Helix	249	271	0.91
Non-Cytoplasmic	272	285	0.70
Transmembrane Helix	286	308	0.74
Cytoplasmic	309	387	0.90