YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109509063, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTGGRRGMR SGKGTEGAAA AASSSFLYRC IECNREAREL YRDYNHGVLK ITICKSCQKP  60
   61 VDKYIEYDPV IILINAILCK TQAYRHILFN TQINIHGKLC MFCLLCEAYL RWWQLQDSSQ 120
  121 SPAPDDVIRY AKEWDFYRMF VIASFEQAAF FTGMFAFLWV QQHMTARGAP DFVLLLKALL 180
  181 LSSYGKLLLI PAVIWEHDHT PLCLRLIKVF VLTSNFQAIR VTLNTNRRLS LLAVLSGLLL 240
  241 ESIMVFFFQR MEWNVGSDCA VYKSQDF

Type	Start	End	Confidence
Cytoplasmic	1	138	0.81
Transmembrane Helix	139	160	0.89
Non-Cytoplasmic	161	172	0.49
Transmembrane Helix	173	195	0.70
Cytoplasmic	196	228	0.58
Transmembrane Helix	229	248	0.92
Non-Cytoplasmic	249	267	0.75