YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|198448900, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.78
Transmembrane Helix	18	39	0.92
Cytoplasmic	40	59	0.76
Transmembrane Helix	60	80	0.93
Non-Cytoplasmic	81	94	0.69
Transmembrane Helix	95	115	0.93
Cytoplasmic	116	221	0.85
Transmembrane Helix	222	242	0.91
Non-Cytoplasmic	243	258	0.83
Transmembrane Helix	259	281	0.87
Cytoplasmic	282	295	0.77
Transmembrane Helix	296	320	0.86
Non-Cytoplasmic	321	333	0.74
Transmembrane Helix	334	355	0.87
Cytoplasmic	356	370	0.75
Transmembrane Helix	371	395	0.72
Non-Cytoplasmic	396	407	0.72
Transmembrane Helix	408	437	0.67
Cytoplasmic	438	582	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALGAVWSRV KNVCQQNGLL ILSVLAVVIG CLLGFFLRSK HLSEQEVKYF QFPGELLMRM  60
   61 LKMLILPLVV SSLMSGLAAL DAKCSSRLGI MTISYYLWTT FVAVVVGIVM VIIIHPGGAA 120
  121 QKEDSEDSGK AIMSSADALL DLIRNMFPAN LVQATFQQYR TRSIPIMKPK PTISQDILET 180
  181 TTKRVFIYGI QDDNGTDIQN FSLDLTPPPD VVFRTLPGTS EGMNVLGIVI FSATMGIMLG 240
  241 RMGPNGSALV NFCQSLNEAV LKIVAIVIWY FPFGIVFLVA GKILEMDDPS AMGKKLGFYA 300
  301 ITVVMGLVLH GLFILPSMYF FITKKSPIVY IRGILQALLI SLATSSSSAT LPITFKCLLE 360
  361 NNHIDRRIIR FVLPVGATIN MDGTALYEAV AAIFIAQVNN YELDFGQIIT ISITATAASI 420
  421 GAAGIPQAGL VTMVIVLTSV GLPTDDITLI IAVDWALDRF RTMVNVMGDA LATGIMAHIC 480
  481 RKDFVKEGEE VRIPLICETK PMISIQQMMS YQKNGCFQPP PPGPMRKPEH LAPDVARLMQ 540
  541 LEEGIRPADN KKSSHLSPLH YKRDQKDKEH CTIDMNGLET NV