YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLD6_DANRE
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVFKQMSFK ELMKVLGLGT VAFVLGVEWL NWLTRRLRDS RGPLKEVLFF PSPQVCVEHL  60
   61 FTSHRSFPCA CPFPHGIQTS FSRLLEHLLS ARTSLEMCIF SFSNMEMSRA ILLLHKRGVV 120
  121 VRVVTDRDYM TITGSQIGAL RKAGISVRHE MSSAVHMHHK FALVDGRKLI SGSLNWTLTA 180
  181 VQSNKENVII TEEPELVRPF QQEFLKLWEA SDPANLKLQS KNGQIKK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.74
Transmembrane Helix	12	33	0.87
Non-Cytoplasmic	34	227	0.79