YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|1718491, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKLVMAQK RGEARALCLG VAMVVCAVVA YYILGTTMLP LYQKSVWTQE STCHLIESNI  60
   61 RDQEELEGKK VPQYPCLWVN VSAVGRWAVL YHTEDTRDQN QQCSYIPRSL ENYQVARADV 120
  121 EKVRTNFHEH RIFYCFSTTR ENETTVLYRR LYGPQTLLFS LFWPTFLLTG GLLIIAMVKI 180
  181 NQSLSILAAQ R

Type	Start	End	Confidence
Cytoplasmic	1	15	0.90
Transmembrane Helix	16	35	0.92
Non-Cytoplasmic	36	158	0.96
Transmembrane Helix	159	180	0.88
Cytoplasmic	181	191	0.89