YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CTR3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.88
Transmembrane Helix	32	54	0.86
Non-Cytoplasmic	55	62	0.75
Transmembrane Helix	63	85	0.91
Cytoplasmic	86	97	0.74
Transmembrane Helix	98	124	0.70
Non-Cytoplasmic	125	162	0.78
Transmembrane Helix	163	183	0.90
Cytoplasmic	184	191	0.66
Transmembrane Helix	192	210	0.95
Non-Cytoplasmic	211	251	0.84
Transmembrane Helix	252	272	0.83
Cytoplasmic	273	285	0.85
Transmembrane Helix	286	308	0.87
Non-Cytoplasmic	309	334	0.91
Transmembrane Helix	335	356	0.92
Cytoplasmic	357	378	0.89
Transmembrane Helix	379	401	0.91
Non-Cytoplasmic	402	408	0.82
Transmembrane Helix	409	428	0.96
Cytoplasmic	429	476	0.96
Transmembrane Helix	477	499	0.94
Non-Cytoplasmic	500	507	0.85
Transmembrane Helix	508	528	0.97
Cytoplasmic	529	537	0.89
Transmembrane Helix	538	559	0.91
Non-Cytoplasmic	560	566	0.81
Transmembrane Helix	567	586	0.92
Cytoplasmic	587	619	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLWQALRRFG QKLVRRRLLE LGMGETRLAR CLSTLDLVAL GVGSTLGAGV YVLAGEVAKE  60
   61 KAGPSIVICF LVAALSSVLA GLCYAEFGAR VPGSGSAYLY SYVTVGELWA FTTGWNLILS 120
  121 YVIGTASVAR AWSSAFDNLI GNHISQTLKG TILLNMPHVL AEYPDFFALA LVLLLTGLLV 180
  181 LGANESGLVT KVFTGMNLLV LGFVIISGFI KGELRNWKLT KEDYCLTMSE SNGTCSLDSM 240
  241 GSGGFMPFGL EGILRGAATC FYAFVGFDCI ATTGEEAQNP QRSIPMGIVI SLSICFLAYF 300
  301 GVSSALTLMM PYYKLQPESP LPEAFTYVGW EPARYLVAIG SLCALSTSLL GSMFPMPRVI 360
  361 YAMAEDGLLF RVLARVHNGT HTPIVATVVS GVIAAFMAFL FELTDLVDLM SIGTLLAYSL 420
  421 VSICVLILRY QPDQEMKNGE EEVELQEERT LEAEKLTVQA LFCQVDSIPT LLSGRIVYVC 480
  481 SSLLAVLLTV LCLVLTWWTT PLHSGDPVWV TVVVLILGLI LGISGVIWRQ PQNRTPLHFK 540
  541 VPVVPLLPLV SIFVNVYLMM QMTADTWARF GVWMLIGFAI YFGYGIQHSV EEVKNHQTLP 600
  601 KTRPQTIDLD LTTSCVHSI