YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UR2R_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSLESTTS FHMLTVSGST VTELPGDSNV SLNSSWSGPT DPSSLKDLVA TGVIGAVLSA  60
   61 MGVVGMVGNV YTLVVMCRFL RASASMYVYV VNLALADLLY LLSIPFIIAT YVTKDWHFGD 120
  121 VGCRVLFSLD FLTMHASIFT LTIMSSERYA AVLRPLDTVQ RSKGYRKLLV LGTWLLALLL 180
  181 TLPMMLAIQL VRRGSKSLCL PAWGPRAHRT YLTLLFGTSI VGPGLVIGLL YVRLARAYWL 240
  241 SQQASFKQTR RLPNPRVLYL ILGIVLLFWA CFLPFWLWQL LAQYHEAMPL TPETARIVNY 300
  301 LTTCLTYGNS CINPFLYTLL TKNYREYLRG RQRSLGSSCH SPGSPGSFLP SRVHLQQDSG 360
  361 RSLSSSSQQA TETLMLSPVP RNGALL

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.72
Transmembrane Helix	52	75	0.87
Cytoplasmic	76	87	0.82
Transmembrane Helix	88	109	0.93
Non-Cytoplasmic	110	125	0.84
Transmembrane Helix	126	146	0.82
Cytoplasmic	147	167	0.83
Transmembrane Helix	168	190	0.89
Non-Cytoplasmic	191	210	0.94
Transmembrane Helix	211	235	0.90
Cytoplasmic	236	255	0.96
Transmembrane Helix	256	278	0.93
Non-Cytoplasmic	279	297	0.93
Transmembrane Helix	298	321	0.61
Cytoplasmic	322	386	0.67