YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ADCY4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.96
Transmembrane Helix	29	50	0.94
Non-Cytoplasmic	51	59	0.82
Transmembrane Helix	60	79	0.96
Cytoplasmic	80	90	0.82
Transmembrane Helix	91	109	0.93
Non-Cytoplasmic	110	115	0.65
Transmembrane Helix	116	135	0.87
Cytoplasmic	136	141	0.75
Transmembrane Helix	142	162	0.92
Non-Cytoplasmic	163	172	0.79
Transmembrane Helix	173	194	0.88
Cytoplasmic	195	362	0.99
Transmembrane Helix	363	382	0.65
Non-Cytoplasmic	383	404	0.62
Transmembrane Helix	405	424	0.65
Cytoplasmic	425	579	0.99
Transmembrane Helix	580	602	0.88
Non-Cytoplasmic	603	608	0.86
Transmembrane Helix	609	632	0.86
Cytoplasmic	633	660	0.90
Transmembrane Helix	661	682	0.90
Non-Cytoplasmic	683	712	0.84
Transmembrane Helix	713	733	0.92
Cytoplasmic	734	740	0.80
Transmembrane Helix	741	761	0.92
Non-Cytoplasmic	762	786	0.87
Transmembrane Helix	787	804	0.88
Cytoplasmic	805	1064	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARLFSPRPP PSEDLFYETY YSLSQQYPLL ILLLVIVLCA IVALPAVAWA SGRELTSDPS  60
   61 FLTTVLCALG GFSLLLGLAS REQQLQRWTR PLSGLIWAAL LALGYGFLFT GGVVSAWDQV 120
  121 SFFLFIIFTV YAMLPLGMRD AAAAGVISSL SHLLVLGLYL GWRPESQRDL LPQLAANAVL 180
  181 FLCGNVVGAY HKALMERALR ATFREALSSL HSRRRLDTEK KHQEHLLLSI LPAYLAREMK 240
  241 AEIMARLQAG QSSRPENTNN FHSLYVKRHQ GVSVLYADIV GFTRLASECS PKELVLMLNE 300
  301 LFGKFDQIAK EHECMRIKIL GDCYYCVSGL PLSLPDHAIN CVRMGLDMCR AIRKLRVATG 360
  361 VDINMRVGVH SGSVLCGVIG LQKWQYDVWS HDVTLANHME AGGVPGRVHI TGATLALLAG 420
  421 AYAVERADME HRDPYLRELG EPTYLVIDPW AEEEDEKGTE RGLLSSLEGH TMRPSLLMTR 480
  481 YLESWGAAKP FAHLSHVDSP ASTSTPLPEK AFSPQWSLDR SRTPRGLHDE LDTGDAKFFQ 540
  541 VIEQLNSQKQ WKQSKDFNLL TLYFREKEME KQYRLSALPA FKYYAACTFL VFLSNFTIQM 600
  601 LVTTRPPALA TTYSITFLLF LLLLFVCFSE HLTKCVQKGP KMLHWLPALS VLVATRPGLR 660
  661 VALGTATILL VFTMAVVSLL FLPVSSDCPF LAPNVSSVAF NTSWELPASL PLISIPYSMH 720
  721 CCVLGFLSCS LFLHMSFELK LLLLLLWLVA SCSLFLHSHA WLSDCLIARL YQGSLGSRPG 780
  781 VLKEPKLMGA IYFFIFFFTL LVLARQNEYY CRLDFLWKKK LRQEREETET MENVLPAHVA 840
  841 PQLIGQNRRN EDLYHQSYEC VCVLFASIPD FKEFYSESNI NHEGLECLRL LNEIIADFDE 900
  901 LLSKPKFSGV EKIKTIGSTY MAATGLNATP GQDTQQDAER SCSHLGTMVE FAVALGSKLG 960
  961 VINKHSFNNF RLRVGLNHGP VVAGVIGAQK PQYDIWGNTV NVASRMESTG VLGKIQVTEE1020
 1021 TARALQSLGY TCYSRGVIKV KGKGQLCTYF LNTDLTRTGS PSAS