YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLMP_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.42
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRCWGPHWG WVPWAPTPWL LLSLLVCTVP FGLLGEETRQ VSMEVISGWP NPQNLLHIRA  60
   61 VGSNSTLHYV WSSLGPPAVV LVATNTTQSV LNVNWSLLLS PDPAGALMVL PKNSIQFSSA 120
  121 LVFTRLLEFD STNVSEGTQP PGKPYPPYSL AKFSWNNVTN SLDLATLSAI FRGHPVDDPT 180
  181 GAFANGSLTF KVQAFSRSGR PAQPPRLLHT ADVCQVEVAL VGASPRGNHS LFGLEVATLG 240
  241 QGPDCPSVNE QDSIDDEYAP AVFQLNRLLW GSSPSGFMQW RPVAFSQEQR ARESALACQA 300
  301 SALHPTLAYP LPHSPIVQAF FGSQNNFCAF NLTFGAPTGP GYWDQHYLCW SMLLGIGFPP 360
  361 VDSFSPLVLG IMAVALGAPG LMFLGGGLFL LLRHKQYSEY QSIN

Type	Start	End	Confidence
Signal Peptide	1	35	0.41
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	367	0.62
Transmembrane Helix	368	392	0.91
Cytoplasmic	393	404	0.93