YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU1M_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFINILTLL IPILIAMGLL TLVERKILGY MQLRKGPNNE GPYGKLQPFA DAMKLFMKEP  60
   61 MRPLTTSMSL FIIAPTLSLT LALSLWIPLP MPHPLINLNL GMPFILATSS LSVYSILWSG 120
  121 WASNSKYSLF GALRAVAQTI SYEVTMALYL LSVLLMSGSF SLQMLITTQE HIWLLIPAWP 180
  181 MAMMWYISTL AETNRAPFDL TEGESELVSG FNVEYAAGPF ALFFMAEYTN IILMNALTSI 240
  241 VFLGPLYHIN YPELYSTSFM TETLLLSTTF LWIRASYPRF RYDQLMHLLW KNFLPLTLAF 300
  301 CMWYISLPIF LAGIPPYT

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.89
Transmembrane Helix	6	24	0.93
Cytoplasmic	25	63	0.94
Transmembrane Helix	64	87	0.89
Non-Cytoplasmic	88	99	0.82
Transmembrane Helix	100	122	0.88
Cytoplasmic	123	138	0.85
Transmembrane Helix	139	162	0.80
Non-Cytoplasmic	163	170	0.73
Transmembrane Helix	171	190	0.89
Cytoplasmic	191	227	0.87
Transmembrane Helix	228	249	0.79
Non-Cytoplasmic	250	254	0.81
Transmembrane Helix	255	275	0.88
Cytoplasmic	276	292	0.82
Transmembrane Helix	293	314	0.89
Non-Cytoplasmic	315	318	0.88