YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C3AR_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESFTADTNS TDLHSRPLFK PQDIASMVIL SLTCLLGLPG NGLVLWVAGV KMKRTVNTVW  60
   61 FLHLTLADFL CCLSLPFSVA HLILRGHWPY GLFLCKLIPS VIILNMFASV FLLTAISLDR 120
  121 CLMVHKPIWC QNHRSVRTAF AVCGCVWVVT FVMCIPVFVY RDLLVVDDYS VCGYNFDSSR 180
  181 AYDYWDYMYN SHLPEINPPD NSTGHVDDRT APSSSVPARD LWTATTALQS QTFHTSPEDP 240
  241 FSQDSASQQP HYGGKPPTVL IATIPGGFPV EDHKSNTLNT GAFLSAHTEP SLTASSSPLY 300
  301 AHDFPDDYFD QLMYGNHAWT PQVAITISRL VVGFLVPFFI MITCYSLIVF RMRKTNLTKS 360
  361 RNKTLRVAVA VVTVFFVCWI PYHIVGILLV ITDQESALRE VVLPWDHMSI ALASANSCFN 420
  421 PFLYALLGKD FRKKARQSVK GILEAAFSEE LTHSTSCTQD KAPSKRNHMS TDV

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.92
Transmembrane Helix	27	49	0.91
Cytoplasmic	50	58	0.92
Transmembrane Helix	59	83	0.89
Non-Cytoplasmic	84	96	0.80
Transmembrane Helix	97	118	0.90
Cytoplasmic	119	137	0.88
Transmembrane Helix	138	160	0.93
Non-Cytoplasmic	161	326	0.98
Transmembrane Helix	327	349	0.90
Cytoplasmic	350	366	0.87
Transmembrane Helix	367	387	0.92
Non-Cytoplasmic	388	406	0.87
Transmembrane Helix	407	428	0.89
Cytoplasmic	429	473	0.96