YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDSNMLPQF IHGILSTSHS LFPRSIQELD EGATTPYDYD DGEPCHKTSV KQIGAWILPP  60
   61 LYSLVFIFGF VGNMLVIIIL ISCKKLKSMT DIYLFNLAIS DLLFLLTLPF WAHYAANEWV 120
  121 FGNIMCKLFT GLYHIGYFGG IFFIILLTID RYLAIVHAVF ALKARTVTFG VITSVVTWVV 180
  181 AVFASLPGII FTKSEQEDDQ HTCGPYFPTI WKNFQTIMRN ILSLILPLLV MVICYSGILH 240
  241 TLFRCRNEKK RHRAVRLIFA IMIVYFLFWT PYNIVLFLTT FQEFLGMSNC VVDMHLDQAM 300
  301 QVTETLGMTH CCVNPIIYAF VGEKFRRYLS IFFRKHIAKN LCKQCPVFYR ETADRVSSTF 360
  361 TPSTGEQEVS VGL

Type	Start	End	Confidence
Non-Cytoplasmic	1	61	0.93
Transmembrane Helix	62	83	0.92
Cytoplasmic	84	91	0.95
Transmembrane Helix	92	113	0.94
Non-Cytoplasmic	114	132	0.86
Transmembrane Helix	133	154	0.87
Cytoplasmic	155	165	0.84
Transmembrane Helix	166	186	0.90
Non-Cytoplasmic	187	220	0.89
Transmembrane Helix	221	243	0.89
Cytoplasmic	244	254	0.92
Transmembrane Helix	255	276	0.89
Non-Cytoplasmic	277	305	0.87
Transmembrane Helix	306	322	0.56
Cytoplasmic	323	373	0.57