YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAQRB_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFRNRFQRF MNHRAPANGR YKPTCYEHAA NCYTHAFLIV PAIVGSALLH RLSDDCWEKI  60
   61 TAWIYGMGLC ALFIVSTVFH IVSWKKSHLR TVEHCFHMCD RMVIYFFIAA SYAPWLNLRE 120
  121 LGPLASHMRW FIWLMAAGGT IYVFLYHEKY KVVELFFYLT MGFSPALVVT SMNNTDGLQE 180
  181 LACGGLIYCL GVVFFKSDGI IPFAHAIWHL FVATAAAVHY YAIWKYLYRS PTDFIRHL

Type	Start	End	Confidence
Cytoplasmic	1	30	0.91
Transmembrane Helix	31	52	0.86
Non-Cytoplasmic	53	60	0.88
Transmembrane Helix	61	82	0.95
Cytoplasmic	83	97	0.84
Transmembrane Helix	98	116	0.86
Non-Cytoplasmic	117	126	0.74
Transmembrane Helix	127	146	0.93
Cytoplasmic	147	154	0.78
Transmembrane Helix	155	172	0.90
Non-Cytoplasmic	173	203	0.53
Transmembrane Helix	204	224	0.90
Cytoplasmic	225	238	0.52