YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZNT4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPGAWKRL KSLLRKDDAP LFLNDTSAFD FLDEVSDEGL SRFNKLRVVV ADDDSEAPER  60
   61 PVNGAHPALQ ADDDSLLDQE LPLTNSQLSL KMDPCDNCSK RRELLKQRKV KTRLTIAAVL 120
  121 YLLFMIGELV GGYMANSLAI MTDALHMLTD LSAIILTLLA LWLSSKSPTR RFTFGFHRLE 180
  181 VLSAMISVML VYVLMGFLLY EAMQRTIHMN YEINGDVMLI TAAVGVAVNV IMGFLLNQSG 240
  241 HHHSHAHSHS LPSNSPSMVS SGHSHGQDSL AVRAAFVHAL GDLVQSVGVL IAAYIIRFKP 300
  301 EYKIADPICT YIFSLLVAFT TLRIIWDTVV IILEGVPSHL NVDYIKESLM KIEDVYSVED 360
  361 LNIWSLTSGK ATAIVHMQLI PGSSSKWEEV QSKAKHLLLN TFGMYKCTVQ LQSYRQEATR 420
  421 TCANCQSSST

Type	Start	End	Confidence
Cytoplasmic	1	111	0.99
Transmembrane Helix	112	135	0.85
Non-Cytoplasmic	136	143	0.82
Transmembrane Helix	144	164	0.92
Cytoplasmic	165	178	0.84
Transmembrane Helix	179	200	0.89
Non-Cytoplasmic	201	216	0.89
Transmembrane Helix	217	237	0.92
Cytoplasmic	238	274	0.85
Transmembrane Helix	275	296	0.69
Non-Cytoplasmic	297	303	0.53
Transmembrane Helix	304	326	0.71
Cytoplasmic	327	430	0.69