YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LYPD3_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAARRGDTQ PVMWTTRWLL LLPLLLCEGA QALECYSCVQ KADDGCSPHK MKTVKCGPGV  60
   61 DVCTEAVGAV ESIHGQFSVA VRGCGSGIPG KNDRGLDLHG LLAFIQLQQC TEDRCNAKLN 120
  121 LTLRGLNPAG NESAYEHNGA ECYSCMGLSR EKCQGAMPPV VNCYNASGRV YKGCFDGNVT 180
  181 LTAANVTVSL PVRGCVQDEA CTRDGVTGPG FTLSGSCCQG PRCNSDLRNK TYFSPRIPPL 240
  241 VLLPPPTTPA PSTRTQNSSS TTSTTAPTTA TTTIKPTTVQ ASHTSSTHET EHEVIQEEGS 300
  301 HLSGGATGHQ DRSNMGKFPE KGGAQIPSKG GSDALGSWLS AILLTVVAGA ML

Type	Start	End	Confidence
Signal Peptide	1	32	0.99
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	352	0.99