YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSPC_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMGSKEVLM ESPPDYSTGP RSQFRIPCCP VHLKRLLIVV VVVVLVVVVI VGALLMGLHM  60
   61 SQKHTEMVLE MSIGGAPETQ KRLALSEHTD TIATFSIGST GIVLYDYQRL LTAYKPAPGT 120
  121 YCYIMKMAPE SIPSLEALAR KFKNFQAKSS TPTSKLGQEE GHSAGSDSDS SGRDLAFLGL 180
  181 AVSTLCGELP LYYI

Type	Start	End	Confidence
Cytoplasmic	1	35	0.88
Transmembrane Helix	36	58	0.93
Non-Cytoplasmic	59	194	0.79