YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149066949, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVSGCLKY SMFFFNFLFW VCGTLILGLA IWLRVSKDGK EIITSGDNGT NPFIAVNILI  60
   61 AVGSIIMVLG FLGCCGAVKE SRCMLLLFFI GLLLILLLQV AAGILGATFK SESSRILNET 120
  121 LYENAKLLSE TSNEAKEVQK AMIAFQSEFK CCGLRFGAAD WGKNFPDAKE SCQCTGSDCE 180
  181 SYNGENVYRT TCLSLIKELV EKNIIIVIGI AFGLAVIEIL GLVFSMVLYC QIGSK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.78
Transmembrane Helix	12	33	0.93
Non-Cytoplasmic	34	52	0.78
Transmembrane Helix	53	75	0.93
Cytoplasmic	76	84	0.67
Transmembrane Helix	85	107	0.93
Non-Cytoplasmic	108	203	0.82
Transmembrane Helix	204	229	0.85
Cytoplasmic	230	235	0.68