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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2879816, gi|3...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPGLNMEL NRLVQDQPPG QEGPRPGPPN PAEHLPNVPS YRPATTRIPV LVSRRTALSN  60
   61 SNFTKEIRSS IRRLVPATKE HPELQVEDTD AEAGPLIPEE TIPPPERPPV SPAKSDTLAV 120
  121 PSAATHRKKL PSQDDEAEEL KALSPAESPV VAWSDPTTPQ EADGEDRAAS TASQNSAIIN 180
  181 DRLQELVKMF KERTEKVKEK LIDPDVTSDE ESPKPSPAKK APDSAPAQKP AEAEAAEEEH 240
  241 YCDMLCCKFK RRPWKMYQFP QSIDPLTNLM YILWLFFVVL AWNWNCWLIP VRWAFPYQRA 300
  301 DNIHLWLLMD YLCDFIYLLD ITVFQMRLQF VKGGDIITDK KEMRNNYLKS QRFKMDLLCL 360
  361 LPLDFLYLKL GVNPLLRLPR CLKYMAFFEF NNRLEAILSK AYVYRVIRTT AYLLYSLHLN 420
  421 SCLYYWASAF QGIGSTHWVY DGVGNSYIRC YYWAVKTLIT IGGLPDPQTL FEIVFQLLNY 480
  481 FTGVFAFSVM IGQMRDVVGA ATAGQTYYRS CMDSTVKYMN FYKIPRSVQN RVKTWYEYTW 540
  541 HSQGMLDESE LMVQLPDKMR LDLAIDVNYN IVSKVALFQG CDRQMIFDML KRLRSVVYLP 600
  601 NDYVCKKGEI GREMYIIQAG QVQVLGGPDG KAVLVTLKAG SVFGEISLLA VGGGNRRTAN 660
  661 VVAHGFTNLF ILDKKDLNEI LVHYPESQKL LRKKARRMLR NNNKPKEEKS VLILPPRAGT 720
  721 PKLFNAALAA AGKMGPRGAK GGKLAHLRAR LKELAALEAA ARQQQLLEQA KSSQEAGGEE 780
  781 GSGATDQPAP QEPSEPKEPP EPPAPSSPPP ASAKPEGSTE EAAGPPEPSV RIRVSPGPDP 840
  841 GEQTLSVEML EEKKEEVE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle