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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CLIP2_RAT
Protein type: Globular with Signal Peptide
Type Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKPSGLKPP GRGGKHSSPV GRPSIGSASS SVVASASGSK EGSPLHKQAS GPSSAGATTT  60
   61 VSEKPGPKAA EVGDDFLGDF VVGERVWVNG VKPGVVQYLG ETQFAPGQWA GVVLDDPVGK 120
  121 NDGAVGGLRY FECPALQGIF TRPSKLTRQP AAEGSGSDGH SVESLTAQNL SLHSGTATPP 180
  181 LTGRVIPLRE SVLNSSVKTG NESGSNLSDS GSVKRGDKDL HLGDRVLVGG TKTGVVRYVG 240
  241 ETDFAKGEWC GVELDEPLGK NDGAVAGTRY FQCPPKFGLF APIHKVIRIG FPSTSPAKAK 300
  301 KTKRMAMGVS ALTHSPSSSS ISSVSSVASS VGGRPSRSGL LTETSSRYAR KISGTTALQE 360
  361 ALKEKQQHIE QLLAERDLER AEVAKATSHI CEVEKEIALL KAQHEQYVAE AEEKLQRARL 420
  421 LVENVRKEKV DLSNQLEEER RKVEDLQFRV EEESITKGDL ETQTQLEHAR IGELEQSLLL 480
  481 EKAQAERLLR ELADNRLTTV AEKSRVLQLE EELSLRRGEI EELQHCLLQS GPPPADHPEA 540
  541 AETLRLRERL LSASKEHQRD STLLQDKYEH MLKTYQTEVD KLRAANEKYA QEVADLKAKV 600
  601 QQATTENMGL MDNWKSKLDS LASDHQKSLE DLKATLNSGP GAQQKEIGEL KALVEGIKME 660
  661 HQLELGNLQA KHDLETAMHG KEKEGLRQKL QEAQEELAGL QQHWRAQLEE QAAAPAELQE 720
  721 AQDQCRDAQL RVQELEGLDV EYRGQAQAIE FLKEQISLAE KKMLDYEMLQ RAEAQSRQEA 780
  781 ERLREKLLVA ENRLQAVESL CSAQHSHVIE SNDLSEEKIR MKETVEGLQD KLNKRDKEVA 840
  841 ALTSQMDMLR AQVSALENKC KSGEKKIDSL LKEKRRLEAE LEAVSRKTHD ASGQLVHISQ 900
  901 ELLRKERSLN ELRVLLLEAN RHSPGPERDL SREVHKAEWR IKEQKLKDDI RGLREKLTGL 960
  961 DKEKSLSEQK RYSLIDPASA PELLRLQHQL VSTEGCLRDA LDQAQQVERL VEALRGCSDR1020
 1021 TQTISNSGSA NGIHQPDKAH KQEDKH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle