YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STX2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDRLPDLTA CRKSDDGDNA VIITVEKDHF MDAFFHQVEE IRSSIARIAQ HVEDVKKNHS  60
   61 IILSAPNPEG KIKEELEDLN KEIKKTANRI RGKLKAIEQS CDQDENGNRT SVDLRIRRTQ 120
  121 HSVLSRKFVD VMTEYNEAQI LFRERSKGRI QRQLEITGRT TTDEELEEML ESGKPSIFIS 180
  181 DIISDSQITR QALNEIESRH KDIMKLETSI RELHEMFMDM AMFVETQGEM VNNIERNVVN 240
  241 SVDYVEHAKE ETKKAIKYQS KARRKKWIIA AVVVAVIAVL ALIIGLTVGK

Type	Start	End	Confidence
Cytoplasmic	1	266	0.94
Transmembrane Helix	267	288	0.95
Non-Cytoplasmic	289	290	0.80