YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU2M_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.53
Transmembrane Helix	26	45	0.79
Cytoplasmic	46	58	0.56
Transmembrane Helix	59	78	0.93
Non-Cytoplasmic	79	92	0.61
Transmembrane Helix	93	115	0.85
Cytoplasmic	116	121	0.55
Transmembrane Helix	122	142	0.66
Non-Cytoplasmic	143	150	0.61
Transmembrane Helix	151	170	0.93
Cytoplasmic	171	186	0.58
Transmembrane Helix	187	221	0.70
Non-Cytoplasmic	222	238	0.47
Transmembrane Helix	239	261	0.88
Cytoplasmic	262	274	0.43
Transmembrane Helix	275	297	0.86
Non-Cytoplasmic	298	322	0.48
Transmembrane Helix	323	344	0.59
Cytoplasmic	345	345	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPITLTIIY LTTFKGRLIT TLSTNLPPMW VGLEMSLLAI IPLLANKKSP RSTEAATKYF  60
   61 LTQATASMII LLVIILNYKQ SGMWTLQQQT NNMLLNMMLI SLAMKLGLAP FHYWLPEVTQ 120
  121 GIPLHIGLIL LTWQKIAPLS ILYQFYQLLN PTITTILAIS SVFVGAWGGL NQTQTRKIMA 180
  181 YSSIAHMGWM TAILPYNPNL TLLNLTIYIL LTVPMFNYIM TNSATTINTL SLAWNKTPMI 240
  241 LTMASIILLS LGGLPPLTGF LPKWAIISEL LKNNCSTLST LMAIMALLSL FFYTRLIYSM 300
  301 SLTTFPTNNN SKMISHHQNP KHNFILPTLT VLSTLTLPLS SQLIT