YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NU5M_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.85
Transmembrane Helix	6	27	0.90
Cytoplasmic	28	36	0.73
Transmembrane Helix	37	58	0.89
Non-Cytoplasmic	59	83	0.82
Transmembrane Helix	84	106	0.85
Cytoplasmic	107	116	0.79
Transmembrane Helix	117	134	0.86
Non-Cytoplasmic	135	140	0.68
Transmembrane Helix	141	161	0.92
Cytoplasmic	162	171	0.84
Transmembrane Helix	172	191	0.90
Non-Cytoplasmic	192	209	0.78
Transmembrane Helix	210	230	0.81
Cytoplasmic	231	243	0.74
Transmembrane Helix	244	264	0.92
Non-Cytoplasmic	265	271	0.79
Transmembrane Helix	272	293	0.94
Cytoplasmic	294	300	0.82
Transmembrane Helix	301	320	0.86
Non-Cytoplasmic	321	331	0.57
Transmembrane Helix	332	350	0.93
Cytoplasmic	351	366	0.88
Transmembrane Helix	367	388	0.89
Non-Cytoplasmic	389	405	0.92
Transmembrane Helix	406	429	0.89
Cytoplasmic	430	456	0.93
Transmembrane Helix	457	477	0.87
Non-Cytoplasmic	478	487	0.73
Transmembrane Helix	488	509	0.89
Cytoplasmic	510	582	0.98
Transmembrane Helix	583	604	0.93
Non-Cytoplasmic	605	610	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMMTILILM ILDLLTTPIT FSMTILTKLM YFRHMLITSI KFSFLLSLLP LLLFFHHNTE  60
   61 YMITNWHWLT INSIKLTMSF KIDYFSILFL SVSLFVTWSI MQFSSWYMHS DPHINRFIKY 120
  121 LMMFLNNMLI LTSANNLFQL FIGWEGVGIM SFLLIGWWYG LADANTAALQ AILYNRVGDI 180
  181 GFILAMTWFC LNMNSWELQQ IFLTNTNNNL VPLTGLLIAA TGKSAQFGLH PWLPSAMEGP 240
  241 TPVSALLHSS TMVVAGIFLM IRFHPLTSNN STIMTAMLCL GAITTLFTAI CALTQNDIKK 300
  301 IVAFSTSSQL GLMMVTLGIN QPYLAFLHIC THAFFKAMLF MCSGSIIHIL NDEQDIRKMG 360
  361 NMMKAMPFTS SCLIIGSLAL TGMPFLTGFY SKDLIIEAIN TCNTNAWALM ITLIATSMTA 420
  421 VYSMRIIYFV TMTKPRYSPL ITINENNPNL INPIKRLALG SILAGFLISL NIPPTNIQIL 480
  481 TMPWHLKMTA LLITILGFAI ALELNNLTLN LSMSKPTKLS SFSTSLGYYP PIMPRIIPQK 540
  541 TLNSSYKLSL NLLDLIWSEK TIPKSTSITQ TQLSKMMSNQ KGLIKLYFLS FLITISLIFI 600
  601 LHTLNPEWFQ